(String inFasta, String outFasta,
int numThreads, boolean removeArtifacts, boolean usePacBioPreset, String minimapOptions)
| 5674 | } |
| 5675 | |
| 5676 | private boolean generateNonRedundantTranscripts(String inFasta, String outFasta, |
| 5677 | int numThreads, boolean removeArtifacts, boolean usePacBioPreset, String minimapOptions) throws IOException { |
| 5678 | |
| 5679 | boolean ok = overlapLayout(inFasta, outFasta, |
| 5680 | numThreads, strandSpecific, minimapOptions, |
| 5681 | maxTipLength, percentIdentity, 2*k, maxIndelSize, removeArtifacts, 1, |
| 5682 | usePacBioPreset, true); |
| 5683 | |
| 5684 | return ok; |
| 5685 | } |
| 5686 | |
| 5687 | private static boolean hasNtcard() { |
| 5688 | try { |
no test coverage detected