Method SeqToGraphWorker

src/rnabloom/RNABloom.java:744–758

(int id, String path, boolean reverseComplement, boolean incrementIfPresent, boolean storeReadPairedKmers)

        private boolean storeReadPairedKmers = false;
        
        public SeqToGraphWorker(int id, String path, boolean reverseComplement, boolean incrementIfPresent, boolean storeReadPairedKmers) {            
            this.id = id;
            this.path = path;
            this.storeReadPairedKmers = storeReadPairedKmers;
            
            int numHash = graph.getMaxNumHash();
            this.itr = reverseComplement ? graph.getReverseComplementHashIterator(numHash) : graph.getHashIterator(numHash);
            
            if (storeReadPairedKmers) {
                int kmerPairDistance = graph.getReadPairedKmerDistance();
                this.pitr = reverseComplement ? graph.getReverseComplementPairedHashIterator(kmerPairDistance) : graph.getPairedHashIterator(kmerPairDistance);
            }
            
            this.addFunction = incrementIfPresent ? graph::addCountIfPresent : graph::add;
        }
                
        @Override
        public void run() {