Method writeShort

src/rnabloom/RNABloom.java:4132–4152

(String seq, float fragMinCov)

        }
        
        public void writeShort(String seq, float fragMinCov) throws IOException {
            boolean isPolya = assemblePolyaTails && polyATailPattern.matcher(seq).matches();

            if (fragMinCov == 1) {
                if (isPolya) {
                    shortPolyaSingletonsOut.write(seq);
                }
                else {
                    shortSingletonsOut.write(seq);
                }
            }
            else {
                int m = getCoverageOrderOfMagnitude(fragMinCov);
                if (isPolya) {
                    shortPolyaFragmentsOut[m].write(seq);
                }
                else {
                    shortFragmentsOut[m].write(seq);
                }
            }
        }
    
        public void writeLong(String seq, float fragMinCov) throws IOException {
            boolean isPolya = assemblePolyaTails && polyATailPattern.matcher(seq).matches();