Main processing method for the FITS_Reader object @param path path of FITS file
(String path)
| 128 | * @param path path of FITS file |
| 129 | */ |
| 130 | public void run(String path) { |
| 131 | // wcs = null; |
| 132 | imagePlus = null; |
| 133 | |
| 134 | AIJLogger.setLogAutoCloses(Prefs.getBoolean(AIJLogger.CERTAIN_LOGS_AUTO_CLOSE, true)); |
| 135 | |
| 136 | if (USE_NEW_READER) { |
| 137 | try (var r = FitsReader.create(path)) { |
| 138 | if (r.size() <= 0) { |
| 139 | if (r.isMeasurementsTable()) { |
| 140 | // Read table |
| 141 | r.getHeaders(); |
| 142 | } |
| 143 | |
| 144 | return; |
| 145 | } |
| 146 | |
| 147 | setFileInfo(r.decodeFileInfo()); |
| 148 | var hdrs = r.getHeaders(); |
| 149 | setProperty("Info", hdrs[0]); |
| 150 | |
| 151 | fileName = r.fileName; |
| 152 | fileType = r.fileType; |
| 153 | fileBase = r.fileBase; |
| 154 | |
| 155 | if (HEADER_ONLY.orElse(false)) { |
| 156 | // Needed for slice info to update |
| 157 | setProcessor(fileName, REF_SLICE.orElse(new ByteProcessor(width, height))); |
| 158 | |
| 159 | IJ.showStatus(""); |
| 160 | return; |
| 161 | } |
| 162 | |
| 163 | var ips = r.getProcessors(); |
| 164 | |
| 165 | if (r.size() == 1) { |
| 166 | setProcessor(fileName, ips[0]); |
| 167 | if (imagePlus == null) return; |
| 168 | var imageProcessor = imagePlus.getProcessor(); |
| 169 | imageProcessor.flipVertical(); |
| 170 | setProcessor(fileName, imageProcessor); |
| 171 | } else if (r.size() > 1) { |
| 172 | var stack = new ImageStack(); |
| 173 | for (int i = 0; i < r.size(); i++) { |
| 174 | stack.addSlice(fileBase + "_" + |
| 175 | (r.size() < 10000 ? fourDigits.format(i + 1) : (i + 1)) + |
| 176 | (!fileType.isEmpty() ? "." + fileType : "") + "\n" + hdrs[i], ips[i]); |
| 177 | } |
| 178 | |
| 179 | setStack(fileName, stack); |
| 180 | } |
| 181 | IJ.showStatus(""); |
| 182 | } catch (Exception e) { |
| 183 | throw new RuntimeException("Error reading Fits file at " + path, e); |
| 184 | } |
| 185 | |
| 186 | return; |
| 187 | } |