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Functions181 in github.com/ACCarnall/bagpipes

↓ 1 callersMethodpredict
Obtain posterior predictions for new observables not included in the data.
bagpipes/fitting/posterior.py:246
↓ 1 callersFunctionrun_cloudy_model
Run an individual cloudy model.
bagpipes/models/making/make_cloudy_models.py:209
↓ 1 callersFunctionsigma_alpha
Lyman-alpha scattering cross section (e.g. Dijkstra 2014) given a temperature `T` in K and optional turbulent velocity `b` in km/s; note
bagpipes/models/dla_model.py:49
↓ 1 callersMethodtransform
Transform numbers on the unit cube to the prior volume.
bagpipes/fitting/prior.py:69
↓ 1 callersMethodupdate
(self, model_components)
bagpipes/models/star_formation_history.py:75
↓ 1 callersMethodupdate
(self, param)
bagpipes/models/dust_attenuation_model.py:58
MethodCF00
Modified Charlot + Fall (2000) model of Carnall et al. (2018) and Carnall et al. (2019b).
bagpipes/models/dust_attenuation_model.py:67
MethodGP_SHOTerm
A GP noise model that uses celerite2's SHOTerm kernel for corellated noise and white noise (jitter term). This have been show
bagpipes/fitting/noise.py:100
MethodGP_double_exp_squared
A GP noise model including a double exponenetial squared kernel for corellated noise and white noise (jitter term).
bagpipes/fitting/noise.py:80
MethodGP_exp_squared
A GP noise model including an exponenetial squared kernel for corellated noise and white noise (jitter term).
bagpipes/fitting/noise.py:65
MethodGaussian
Gaussian prior between limits with specified mu and sigma.
bagpipes/fitting/prior.py:118
MethodSalim
(self, param)
bagpipes/models/dust_attenuation_model.py:75
Method__init__
(self, galaxy, fit_instructions, time_calls=False)
bagpipes/fitting/fitted_model.py:33
Method__init__
(self, calib_dict, spectrum, spectral_model)
bagpipes/fitting/calibration.py:22
Method__init__
(self, galaxy, fit_instructions, run=".", time_calls=False, n_posterior=500)
bagpipes/fitting/fit.py:112
Method__init__
(self, noise_dict, galaxy, spectral_model)
bagpipes/fitting/noise.py:34
Method__init__
(self, galaxy, run=".", n_samples=500)
bagpipes/fitting/posterior.py:39
Method__init__
(self, limits, pdfs, hyper_params)
bagpipes/fitting/prior.py:56
Method__init__
(self, fit_instructions, filt_list=None, spec_wavs=None, n_draws=10000, phot_units="ergscma")
bagpipes/fitting/check_priors.py:15
Method__init__
(self, filt_list)
bagpipes/filters/filter_set.py:22
Method__init__
(self, model_comp, sfh_weights)
bagpipes/models/chemical_enrichment_history.py:10
Method__init__
(self, model_components, log_sampling=0.0025)
bagpipes/models/star_formation_history.py:49
Method__init__
(self, wavelengths, velshift)
bagpipes/models/nebular_model.py:21
Method__init__
(self, wavelengths)
bagpipes/models/stellar_model.py:19
Method__init__
(self, wavelengths)
bagpipes/models/dust_emission_model.py:20
Method__init__
(self, model_components, filt_list=None, spec_wavs=None, spec_units="ergscma", phot_units="er
bagpipes/models/model_galaxy.py:61
Method__init__
(self, wavelengths)
bagpipes/models/igm_model.py:29
Method__init__
(self, wavelengths, param)
bagpipes/models/dust_attenuation_model.py:30
Method__init__
(self, wavelengths)
bagpipes/models/agn_model.py:19
Method__init__
(self, IDs, fit_instructions, load_data, spectrum_exists=True, photometry_exists=True, make_p
bagpipes/catalogue/fit_catalogue.py:98
Method__init__
(self, ID, load_data=None, spec_units="ergscma", phot_units="mujy", spectrum_exists=True, pho
bagpipes/input/galaxy.py:83
Methodburst
A delta function burst of star-formation.
bagpipes/models/star_formation_history.py:194
Methodconst_exp
(self, sfr, param)
bagpipes/models/star_formation_history.py:251
Methodconstant
constant metallicity without any variation in time, distribution of coeval stars can be specified thorugh 'metallicity_scatter'
bagpipes/models/chemical_enrichment_history.py:197
Methodconstant
Constant star-formation between some limits.
bagpipes/models/star_formation_history.py:205
Methodcontinuity
(self, sfr, param)
bagpipes/models/star_formation_history.py:350
Methodcustom
(self, sfr, param)
bagpipes/models/star_formation_history.py:359
Methoddblplaw
(self, sfr, param)
bagpipes/models/star_formation_history.py:280
Methoddelayed
(self, sfr, param)
bagpipes/models/star_formation_history.py:242
Methoddouble_polynomial_bayesian
Bayesian fitting of Chebyshev calibration polynomial.
bagpipes/fitting/calibration.py:46
Methodexponential
Exponential prior in x where x is the parameter.
bagpipes/fitting/prior.py:86
Methodexponential
(self, sfr, param)
bagpipes/models/star_formation_history.py:224
Methodfit
Fit the specified model to the input galaxy data. Parameters ---------- verbose : bool - optional Set to True t
bagpipes/fitting/fit.py:155
Methodget_advanced_quantities
Calculates advanced derived prior quantities, these are slower because they require the full model spectra.
bagpipes/fitting/check_priors.py:187
Methodiyer
(self, sfr, param)
bagpipes/models/star_formation_history.py:294
Methodlog_10
Uniform prior in log_10(x) where x is the parameter.
bagpipes/fitting/prior.py:92
Methodlog_e
Uniform prior in log_e(x) where x is the parameter.
bagpipes/fitting/prior.py:98
Methodlognorm
log normal metallicity distribution for coeval stars. Functional form: P(x) = 1/(x*sigma*np.sqrt(2*np.pi)) * n
bagpipes/models/chemical_enrichment_history.py:162
Functionlognorm_equations
Equations for finding the tau and T0 for a lognormal SFH given some tmax and FWHM. Needed to transform variables.
bagpipes/models/star_formation_history.py:20
Methodlognormal
(self, sfr, param)
bagpipes/models/star_formation_history.py:261
Functionmake_dirs
Make local Bagpipes directory structure in working dir.
bagpipes/utils.py:8
Functionmake_table
Make up the igm absorption table used by bagpipes.
bagpipes/models/making/igm_inoue2014.py:216
Methodmetallicity_bins
Different metallicities in each specificed time bin.
bagpipes/models/chemical_enrichment_history.py:70
Methodmetallicity_bins_continuity
Work like Leja continuity SFH, zmet varies with dirichlet prior.
bagpipes/models/chemical_enrichment_history.py:102
Methodmulti_polynomial_max_like
(self)
bagpipes/fitting/calibration.py:95
Methodplot
(self, show=True)
bagpipes/models/star_formation_history.py:372
Functionplot_1d_posterior
(fit, fit2=False, show=False, save=True)
bagpipes/plotting/plot_1d_posterior.py:15
Functionplot_calibration
Plot the posterior of the calibration spectral correction.
bagpipes/plotting/plot_calibration.py:15
Functionplot_corner
Make a corner plot of the fitted parameters.
bagpipes/plotting/plot_corner.py:15
Functionplot_full_spectrum
Make a quick plot of an individual model galaxy.
bagpipes/plotting/plot_model_galaxy.py:114
Methodplot_full_spectrum
(self, show=True)
bagpipes/models/model_galaxy.py:594
Functionplot_model_galaxy
Make a quick plot of an individual model galaxy.
bagpipes/plotting/plot_model_galaxy.py:16
Functionplot_sfh
Make a quick plot of an individual sfh.
bagpipes/plotting/plot_sfh.py:15
Functionplot_sfh_posterior
Make a plot of the SFH posterior.
bagpipes/plotting/plot_sfh_posterior.py:17
Functionplot_spectrum_posterior
Plot the observational data and posterior from a fit object.
bagpipes/plotting/plot_spectrum_posterior.py:16
Methodpolynomial_bayesian
Bayesian fitting of Chebyshev calibration polynomial.
bagpipes/fitting/calibration.py:36
Methodpolynomial_max_like
(self)
bagpipes/fitting/calibration.py:79
Methodpow_10
Uniform prior in 10**x where x is the parameter.
bagpipes/fitting/prior.py:103
Methodpredict_basic_quantities_at_redshift
Predicts basic (SFH-based) quantities at a specified higher redshift. This is a bit experimental, there's probably a better way. Only
bagpipes/fitting/posterior.py:280
Methodpsb_two_step
2-step metallicities (time-varying!) for psb_wild2020 SFH model shift in metallicity at burstage parameter from SFH model For
bagpipes/models/chemical_enrichment_history.py:255
Methodpsb_wild2020
A 2-component SFH for post-starburst galaxies. An exponential compoent represents the existing stellar population before the
bagpipes/models/star_formation_history.py:306
Methodrecip
(self, value, limits, hyper_params)
bagpipes/fitting/prior.py:108
Methodrecipsq
Uniform prior in 1/x**2 where x is the parameter.
bagpipes/fitting/prior.py:112
Functionrun_cloudy_grid
Generate the whole grid of cloudy models and save to file.
bagpipes/models/making/make_cloudy_models.py:357
Methodspectrum
Obtain a split 1D spectrum for a given star-formation and chemical enrichment history, one for ages lower than t_bc, one for ages hig
bagpipes/models/stellar_model.py:106
Methodspectrum
Get the 1D spectrum for a given set of model parameters.
bagpipes/models/dust_emission_model.py:23
Methodstudent_t
(self, value, limits, hyper_params)
bagpipes/fitting/prior.py:130
Functiontest
Test the above code by generating a plot from Inoue et al. (2014).
bagpipes/models/making/igm_inoue2014.py:237
Methodtwo_step
2-step metallicities (time-varying!) time of shift is a free parameter
bagpipes/models/chemical_enrichment_history.py:210
Methoduniform
Uniform prior in x where x is the parameter.
bagpipes/fitting/prior.py:80
Methodwhite_scaled
A simple variable noise model with no covariances. Scales the input error spectrum by a constant factor.
bagpipes/fitting/noise.py:58
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