Function bundle

scripts/build_synthesis_bundle.py:342–412

(
    metadata: dict,
    evidence_wrapper: dict,
    figures_wrapper: dict,
    assets_wrapper: dict,
    source_manifest: dict | None = None,
    figure_decisions_wrapper: dict | None = None,
)

def bundle(
    metadata: dict,
    evidence_wrapper: dict,
    figures_wrapper: dict,
    assets_wrapper: dict,
    source_manifest: dict | None = None,
    figure_decisions_wrapper: dict | None = None,
) -> dict:
    evidence_pack = (
        evidence_wrapper.get("evidence_pack", {})
        if isinstance(evidence_wrapper.get("evidence_pack"), dict)
        else {}
    )
    figure_plan = (
        figures_wrapper.get("figure_plan", {})
        if isinstance(figures_wrapper.get("figure_plan"), dict)
        else {}
    )
    source_manifest = source_manifest or {}
    figure_decisions_wrapper = figure_decisions_wrapper or {}

    return {
        "status": "ok",
        "script": "build_synthesis_bundle.py",
        "paper_id": metadata.get("paper_id") or evidence_wrapper.get("paper_id", ""),
        "title": metadata.get("title") or evidence_wrapper.get("title", ""),
        "metadata": {
            "title": metadata.get("title", ""),
            "translated_title": metadata.get("translated_title", ""),
            "authors": metadata.get("authors", []),
            "affiliations": metadata.get("affiliations", []),
            "year": metadata.get("year", ""),
            "venue": metadata.get("venue", ""),
            "doi": metadata.get("doi", ""),
            "source_url": metadata.get("source_url", ""),
            "abstract": metadata.get("abstract", ""),
            "arxiv_id": metadata.get("arxiv_id", ""),
            "zotero_key": metadata.get("zotero_key", ""),
            "metadata_sources": metadata.get("metadata_sources", []),
            "identity_confidence": metadata.get("identity_confidence", ""),
            "identity_confidence_reasons": metadata.get("identity_confidence_reasons", []) or [],
        },
        "evidence_quality": evidence_pack.get("evidence_quality", "unknown"),
        "coverage": coverage_summary(evidence_pack, metadata, assets_wrapper, source_manifest),
        "source_manifest": {
            "paper_id": source_manifest.get("paper_id", ""),
            "title": source_manifest.get("title", ""),
            "source_kind": source_manifest.get("source_kind", ""),
            "raw_sections_path": source_manifest.get("raw_sections_path", ""),
            "full_text_md_path": source_manifest.get("full_text_md_path", ""),
            "pdf": source_manifest.get("pdf", {}) or {},
            "coverage": source_manifest.get("coverage", {}) or {},
        },
        "source_index": source_index(source_manifest),
        "references": {"candidates": sanitize_reference_candidates(evidence_pack)},
        "figure_plan": figure_plan,
        "figure_table_manifest": figure_table_manifest(
            figure_decisions_wrapper,