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3,069 symbols 9,829 edges 379 files 716 documented · 23% ● updated 6y ago★ 334 open issues

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⨍ Functions 2,707◇ Types & classes 362

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Extension points exported contracts — how you extend this code

Resetter (Interface)

Resetter resets a ReadCloser returned by NewReader or NewReaderDict to to switch to a new underlying Reader. This permit [4 …

lib/go/src/code.google.com/p/biogo.bam/bgzf/flate/inflate.go

HmmModel (Interface)

(no doc) [4 implementers]

lib/rust/hmm-bc-cnv/src/hmm.rs

Smer (Interface)

(no doc) [1 implementers]

lib/tada/src/cmd_msp.rs

Reader (Interface)

The actual read interface needed by NewReader. If the passed in io.Reader does not also have ReadByte, the NewReader wil

lib/go/src/code.google.com/p/biogo.bam/bgzf/flate/inflate.go

Strategy (FuncType)

(no doc)

lib/go/src/code.google.com/p/biogo.bam/index.go

TsvCallback (FuncType)

(no doc)

lib/go/src/loupe/formats/generic_tsv.go

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Core symbols most depended-on inside this repo

↓ 8 filesUnionFind

Union-find data structure. Each unionFind instance X maintains a family of disjoint sets of hashable objects, supporting the …

mro/stages/reporter/filter_barcodes/union_find.py

↓ 7 filesgroupby

tenkit/mro/stages/bcl_processor/demultiplex/__init__.py

↓ 2 filesPhaser

Constructs and outputs inferred haplotypes.

mro/stages/snpindels/phase_snpindels/phaser.py

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Shape

Function 1,597

Method 1,110

Class 212

Struct 108

TypeAlias 28

Enum 6

Interface 6

FuncType 2

Languages

Python52%

Go27%

Rust20%

C++1%

C1%

Modules by API surface

tenkit/lib/python/tenkit/bio_io.py90 symbols

tenkit/lib/python/tenkit/summary_manager.py67 symbols

lib/tada/src/kmer/mod.rs63 symbols

tenkit/lib/python/tenkit/bam.py61 symbols

lib/tada/src/bitenc.rs47 symbols

tenkit/lib/python/tenkit/hdf5.py43 symbols

lib/tada/src/cmd_sort_fastq.rs42 symbols

lib/python/longranger/sv/readpairs.py42 symbols

lib/python/longranger/sv/io.py38 symbols

tenkit/lib/python/tenkit/samplesheet.py33 symbols

lib/python/longranger/sv/utils.py32 symbols

lib/go/src/code.google.com/p/biogo.bam/bgzf/flate/inflate.go31 symbols

For agents

$ claude mcp add longranger \
  -- python -m otcore.mcp_server <graph>

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github.com/10XGenomics/longranger @main

Extension points exported contracts — how you extend this code

Core symbols most depended-on inside this repo

Shape

Languages

Modules by API surface

For agents

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